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Genialis Inc genialis expressions software
Genialis Expressions Software, supplied by Genialis Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genialis+expressions+software/genialis+expressions+software/pmc12259260-190-5-5
Average 90 stars, based on 1 article reviews
genialis expressions software - by Bioz Stars, 2026-09
90/100 stars

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RNA sequencing:

Article Title: HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β3–containing extracellular vesicles
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the JHGRCF High-Throughput Sequencing Center. .. RNA-Seq data were processed using Genialis Expressions software as described in Supplemental Methods and submitted to the NCBI’s Gene Expression Omnibus (GEO) database (GSE268804). ..

Article Title: HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β 3 –containing extracellular vesicles
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the JHGRCF High-Throughput Sequencing Center. .. RNA-Seq data were processed using Genialis Expressions software as described in and submitted to the NCBI’s Gene Expression Omnibus (GEO) database ( GSE268804 ). ..

Software:

Article Title: HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β3–containing extracellular vesicles
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the JHGRCF High-Throughput Sequencing Center. .. RNA-Seq data were processed using Genialis Expressions software as described in Supplemental Methods and submitted to the NCBI’s Gene Expression Omnibus (GEO) database (GSE268804). ..

Article Title: Hypoxia-inducible factor 1 recruits FACT and RNF20/40 to mediate histone ubiquitination and transcriptional activation of target genes.
Article Snippet: RNA-seq data were processed and interpreted using Genialis Expressions software (https://www.genialis.com) as previously described.19 An absolute value of RNA fold change (|FC|) > 1.5 and FDR < 0.05 were used as criteria for identification of hypoxia-induced and hypoxia-repressed RNAs. .. RNA-seq data were processed and interpreted using Genialis Expressions software (https://www.genialis.com) as previously described.19 An absolute value of RNA fold change (|FC|) > 1.5 and FDR < 0.05 were used as criteria for identification of hypoxia-induced and hypoxia-repressed RNAs. .. Data were analyzed and visualized using Heatmapper for heat maps and Genialis Expressions software for Venn diagrams.63,64 For NCATS BioPlanet pathway analysis,65 a combined score was calculated by taking the log of the p value from the Fisher exact test and multiplying it by the Z score of the deviation from the expected rank.

Article Title: HIF-1 Interacts with TRIM28 and DNA-PK to release paused RNA polymerase II and activate target gene transcription in response to hypoxia
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the Johns Hopkins Genetics Resources Core Facility High-Throughput Sequencing Center. .. RNA-seq data were processed and interpreted using Genialis Expressions software ( https://www.genialis.com ). .. The automated data analysis on the Genialis platform consisted of the following steps: sequence quality checks were performed on raw and trimmed reads (FastQC), trimming and quality filtering of reads (BBDuk), mapping to reference human genome Ensembl v.92 (STAR), expression quantification (featureCounts), and expression normalisation (RNA.norm).

Article Title: HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β 3 –containing extracellular vesicles
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the JHGRCF High-Throughput Sequencing Center. .. RNA-Seq data were processed using Genialis Expressions software as described in and submitted to the NCBI’s Gene Expression Omnibus (GEO) database ( GSE268804 ). ..

Article Title: HIF-1 Interacts with TRIM28 and DNA-PK to release paused RNA polymerase II and activate target gene transcription in response to hypoxia.
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the Johns Hopkins Genetics Resources Core Facility High-Throughput Sequencing Center. .. RNA-seq data were processed and interpreted using Genialis Expressions software (https://www.genialis.com). .. The automated data analysis on the Genialis NATURE COMMUNICATIONS | (2022) 13:316 | https://doi.org/10.1038/s41467-021-27944-8 | www.nature.com/naturecommunications 13 platform consisted of the following steps: sequence quality checks were performed on raw and trimmed reads (FastQC), trimming and quality filtering of reads (BBDuk), mapping to reference human genome Ensembl v.92 (STAR), expression quantification (featureCounts), and expression normalisation (RNA.norm).

Gene Expression:

Article Title: HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β3–containing extracellular vesicles
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the JHGRCF High-Throughput Sequencing Center. .. RNA-Seq data were processed using Genialis Expressions software as described in Supplemental Methods and submitted to the NCBI’s Gene Expression Omnibus (GEO) database (GSE268804). ..

Article Title: HIF-1 promotes murine breast cancer brain metastasis by increasing production of integrin β 3 –containing extracellular vesicles
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the JHGRCF High-Throughput Sequencing Center. .. RNA-Seq data were processed using Genialis Expressions software as described in and submitted to the NCBI’s Gene Expression Omnibus (GEO) database ( GSE268804 ). ..

RNA Sequencing:

Article Title: Hypoxia-inducible factor 1 recruits FACT and RNF20/40 to mediate histone ubiquitination and transcriptional activation of target genes.
Article Snippet: RNA-seq data were processed and interpreted using Genialis Expressions software (https://www.genialis.com) as previously described.19 An absolute value of RNA fold change (|FC|) > 1.5 and FDR < 0.05 were used as criteria for identification of hypoxia-induced and hypoxia-repressed RNAs. .. RNA-seq data were processed and interpreted using Genialis Expressions software (https://www.genialis.com) as previously described.19 An absolute value of RNA fold change (|FC|) > 1.5 and FDR < 0.05 were used as criteria for identification of hypoxia-induced and hypoxia-repressed RNAs. .. Data were analyzed and visualized using Heatmapper for heat maps and Genialis Expressions software for Venn diagrams.63,64 For NCATS BioPlanet pathway analysis,65 a combined score was calculated by taking the log of the p value from the Fisher exact test and multiplying it by the Z score of the deviation from the expected rank.

Article Title: HIF-1 Interacts with TRIM28 and DNA-PK to release paused RNA polymerase II and activate target gene transcription in response to hypoxia
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the Johns Hopkins Genetics Resources Core Facility High-Throughput Sequencing Center. .. RNA-seq data were processed and interpreted using Genialis Expressions software ( https://www.genialis.com ). .. The automated data analysis on the Genialis platform consisted of the following steps: sequence quality checks were performed on raw and trimmed reads (FastQC), trimming and quality filtering of reads (BBDuk), mapping to reference human genome Ensembl v.92 (STAR), expression quantification (featureCounts), and expression normalisation (RNA.norm).

Article Title: HIF-1 Interacts with TRIM28 and DNA-PK to release paused RNA polymerase II and activate target gene transcription in response to hypoxia.
Article Snippet: Library preparation and sequencing using the NovaSeq 6000 platform (Illumina) were performed by the Johns Hopkins Genetics Resources Core Facility High-Throughput Sequencing Center. .. RNA-seq data were processed and interpreted using Genialis Expressions software (https://www.genialis.com). .. The automated data analysis on the Genialis NATURE COMMUNICATIONS | (2022) 13:316 | https://doi.org/10.1038/s41467-021-27944-8 | www.nature.com/naturecommunications 13 platform consisted of the following steps: sequence quality checks were performed on raw and trimmed reads (FastQC), trimming and quality filtering of reads (BBDuk), mapping to reference human genome Ensembl v.92 (STAR), expression quantification (featureCounts), and expression normalisation (RNA.norm).



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Genialis Inc genialis expressions software
Genialis Expressions Software, supplied by Genialis Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genialis+expressions+software/genialis+expressions+software/pmc12259260-190-5-5
Average 90 stars, based on 1 article reviews
genialis expressions software - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

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Genialis Inc genialis expression software
Genialis Expression Software, supplied by Genialis Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genialis+expressions+software/genialis+expressions+software/10__1158_slash_2159___8290__cd___20___1066-262-7-10
Average 90 stars, based on 1 article reviews
genialis expression software - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

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